Hyperdia

Fare table

Hyperdia perfect guide, train timetable and route search engine

If you want to build your itinerary by yourself, Hyperdia will help you a lot. This site is transportation search engine. You can search the timetables and routes of all trains, flights and airport shuttle bus. But this site is a bit tricky and too many functions and options to you. This guide will help you to find the way to use this site.
Fare table

Guide to plan your trip. Fare Calculation

This post explains you the information about the fare calculation of the trains in Japan.
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